Unsortable table --Use the browser's search function instead (usually CTRL+F) Primer | Name | Origin | Protein | Direction | Start | End | Length | Box | Loc -------|------|--------|---------|-----------|-------|-----|--------|-----|---- CCACACACAAGGCTACTTCC | SQ16F | HIV(CLADEC) | | F | 56 | 75 | 20 | | CACCATCCAAAGGTCAGTGG | SQ2R | HIV(CLADEC) | | R | 136 | 117 | 20 | | AGACCAGATCTGAGCCYGGGAGCTCT | 5'UTR1 | HIV(CLADEC) | GAG | F | 468 | 493 | 26 | | ATCTGAGCCTGGGAGCTCTCTGGCT | 5'UTR1 | HIV | 5UTR | F | 475 | 499 | 25 | 1 | 1 CTAGGGAACCCACTGCTTAAGCCT | 5'UTR2 | HIV | 5UTR | F | 502 | 525 | 24 | 1 | 2 CACTGCTTAAGCCTCAATAAAGCTTGCC | 5'UTR2 | HIV(CLADEC) | GAG | F | 512 | 539 | 28 | | TAGAGCACTCAAGGCAAGCTTTATTGAGGCTTA | 2.3'3'p1Cb | HIV(CLADEC) | | R | 551 | 519 | 33 | | AGTAGTGTGTGCCCGTCTGTTGTGTGACTC | U5Cd | HIV(CLADEC) | | F | 552 | 581 | 30 | | AAATCTCTAGCAGTGGCGCCCGAACAG | 623-Fi(gag) | HIV | GAG | F | 623 | 649 | 27 | 1 | 3 GAGGAGATCTCTCGACGCAGGAC | Gag+1 | HIV | GAG | F | 675 | 697 | 23 | 1 | 4 GATCTCTCGACGCAGGACTCGGCT | Gag+2 | HIV | GAG | F | 680 | 703 | 24 | 1 | 5 GACGCAGGACTCGGCTTGCTGA | GS1F | HIV | GAG | F | 688 | 709 | 22 | 1 | 6 GCAGGACTCGGCTTGCTGAA | G1(gag) | HIV | GAG | F | 691 | 710 | 20 | 1 | 7 GCGCGCACAGCAAGAGGCGA | LA8 | HIV | 5'LTR | F | 711 | 730 | 20 | 1 | 8 GCGGCGACTGGTGAGTA | G2(gag) | HIV | GAG | F | 734 | 750 | 17 | 1 | 9 GCGGCGACTGGTGAGTACGC | Gag+3 | HIV | GAG | F | 734 | 753 | 20 | 1 | 10 TTGACTAGCGGAGGCTAGAAGG | GA783F | HIV | GAG | F | 762 | 783 | 22 | 1 | 11 TGACTAGCGGAGGCTAGAA | GF763 | HIV(CLADEC) | GAG | F | 763 | 781 | 19 | | AGAGATGGGTGCGAGAGCGTC | GA806F | HIV | GAG | F | 786 | 806 | 21 | 1 | 12 ACCGAATTTTTTCCCATCGAT | GA850R | HIV | GAG | R | 850 | 830 | 21 | 1 | 13 TAGTATGGGCAAGCAGGGAGCT | GS1A | HIV | GAG | F | 890 | 911 | 22 | 1 | 14 TAGTATGGGCAAGCAGGGARCTRGA | GA890F | HIV | GAG | F | 890 | 914 | 25 | 1 | 15 TCTAGCTCCCTGCTTGCCCATACTA | GA889R | HIV | GAG | R | 914 | 890 | 25 | 1 | 16 TTCTAGCTCCCTGCTTGCCCATACTA | GS889R | HIV | GAG | R | 915 | 890 | 26 | 1 | 17 GATTCGCAGTTAATCCTGGCCT | GA917F | HIV | GAG | F | 917 | 938 | 22 | 1 | 18 GGATTAACTGCGAATCGTTCTAGCTCC | GA932R | HIV | GAG | R | 932 | 906 | 27 | 1 | 19 CCCTYCAGACAGGATCAGAAG | 1cFx | HIV | GAG | F | 989 | 1009 | 21 | 1 | 20 CTTCAGACAGGAACAGAGGA | SQ2FC | HIV(CLADEC) | | F | 991 | 1010 | 20 | | GCAACCCTCTATTGTGTRCATC | t1cF | HIV | GAG | F | 1036 | 1057 | 22 | 1 | 21 GAKRTAAAAGACACCAAGGAAGCTTTAGA | GA1074F | HIV | GAG | F | 1066 | 1094 | 29 | 1 | 22 TTAGACAAGATAGAGGAAGA | GAS1F | HIV | GAG | F | 1090 | 1109 | 20 | 1 | 23 TTATCTAAAGCTTCCTTGGTGTCT | GS1R | HIV | GAG | R | 1097 | 1074 | 24 | 1 | 24 CTTGTCTAGGGCTTCCTTGGT | SQ16RC | HIV(CLADEC) | | R | 1098 | 1078 | 21 | | GAGGAAGAACAAAACAAAAGTCAG | SQ2FC(2) | HIV(CLADEC) | | F | 1102 | 1125 | 24 | | CTGACCTGATTGCTGTGTCC | GAS2R | HIV | GAG | R | 1175 | 1156 | 20 | 1 | 25 GCCTATAGTGCAGAACATG | T7JFp24-F | HIV | GAG | F | 1185 | 1203 | 19 | 1 | 26 CTGATGTACCATTTGCCC | t1bR | HIV | GAG | R | 1224 | 1207 | 18 | 1 | 27 ACCTAGAACTTTAAATGCATGGG | pan1dFx | HIV | GAG | F | 1233 | 1255 | 23 | 1 | 28 ACCCATGCATTTAAAGTTC | pan1bR | HIV | GAG | R | 1256 | 1238 | 19 | 1 | 29 AGAAGARAAGGCTTTYAGCCC | 1dFx | HIV | GAG | F | 1266 | 1286 | 21 | 1 | 30 GGTATTACTTCTGGGCTRAAAGC | 1bRx | HIV | GAG | R | 1298 | 1276 | 23 | 1 | 31 CCATGTTTTCAGCATTATCA | t1dF | HIV | GAG | F | 1298 | 1317 | 20 | 1 | 32 CAGCATTATCAGAAGGAGCCAC | GS2F | HIV | GAG | F | 1307 | 1328 | 22 | 1 | 33 AATCTTGTGGGGTGGCTCCTTCTG | GS1B | HIV | GAG | R | 1339 | 1316 | 24 | 1 | 34 AAAAGAGACCATCAATGAGGAAGC | FNL43 | HIV | GAG | F | 1392 | 1415 | 24 | 1 | 35 CATCAATGAGGAAGCTGCAG | GAS3F | HIV | GAG | F | 1401 | 1420 | 20 | 1 | 36 CATCAATGAGGAAGCTGCAGATGGGA | GS3F | HIV | GAG | F | 1401 | 1427 | 27 | 1 | 37 TGGTGCAATAGGCCCTGC | RNL43 | HIV | GAG | R | 1464 | 1447 | 18 | 1 | 38 GGTTCTCTCATCTGGCCTGG | GAS4R | HIV | GAG | R | 1481 | 1462 | 20 | 1 | 39 GGTTCTCTCATCTGGCCTGGT | GS2R | HIV | GAG | R | 1481 | 1461 | 21 | 1 | 40 TTCCTGCTATGTCACTTCC | pan1cRx | HIV | GAG | R | 1504 | 1486 | 19 | 1 | 41 TGTCATCCATSCTATTTGTTCC | t1cR | HIV | GAG | R | 1542 | 1521 | 22 | 1 | 42 TAATCCACCTATCCCAGTAGG | 1eFx | HIV | GAG | F | 1545 | 1565 | 21 | 1 | 43 CCACCTATCCCAGTAGGAG | pan1eFx | HIV | GAG | F | 1549 | 1567 | 19 | 1 | 44 GGGAGACATCTATAAAAGATGGATAA | SQ3FC(2) | HIV(CLADEC) | | F | 1563 | 1588 | 26 | | TATAAAAGATGGATAATC | seq1eF | HIV | GAG | F | 1573 | 1590 | 18 | 1 | 45 ATAGTAAGAATGTATAGCCCT | GS4F | HIV | GAG | F | 1606 | 1626 | 21 | 1 | 46 TTTGGTCCTTGTCTTATGTCCAGAATGC | SQ15R | HIV(CLADEC) | | R | 1658 | 1631 | 28 | | CTCTAAGAGCCGAGCAAGCT | GAS5F | HIV | GAG | F | 1697 | 1716 | 20 | 1 | 47 CAGAAACCTTGTTGGTCCAAAATGCG | ProD+ | HIV | GAG | F | 1742 | 1767 | 26 | 1 | 48 CAACAAGGTTTCTGTCATCC | pan1dRx | HIV | GAG | R | 1755 | 1736 | 20 | 1 | 49 AAAATAGTCTTACAATCTGG | GAS6R | HIV | GAG | R | 1790 | 1771 | 20 | 1 | 50 CACTAGAAGAAATGATGACAGC | GS5F | HIV | GAG | F | 1814 | 1835 | 22 | 1 | 51 AGAAATGATGACAGCATGTC | pan1fFx | HIV | GAG | F | 1821 | 1840 | 20 | 1 | 52 GCTGTCATCATTTCTTCTAGTG | t1dR | HIV | GAG | R | 1835 | 1814 | 22 | 1 | 53 TGTCAGGGAGTGGGAGGACC | t2bF | HIV | GAG | F | 1837 | 1856 | 20 | 1 | 54 TGACATGCTGTCATCATTTCTTCTA | GS3R | HIV | GAG | R | 1841 | 1817 | 25 | 1 | 55 GTTAAGTGTTTCAATTGTGG | HPR1977F | HIV | PR | F | 1957 | 1977 | 21 | 1 | 56 GAAGGGCACACAGCCAGAAATTGCAGGG | 5'CP1 | HIV | RT | F | 1981 | 2008 | 28 | 1 | 57 GCCCCTAGGAAAAAGGGCTGTTGG | PRTO5 | HIV | RT | F | 2008 | 2031 | 24 | 1 | 58 CCCTGCAATTTYTGGCTRTGTGCCCT | GA2008R | HIV | GAG | R | 2008 | 1983 | 26 | 1 | 59 CCTAGGAAAAAGGGCTGTTGGAAATGTGG | 2.5 | HIV | RT | F | 2011 | 2039 | 29 | 1 | 60 CATTTCCAACAGCCCTTTTTCCTAGG | GA2036R | HIV | GAG | R | 2036 | 2011 | 26 | 1 | 61 TGTCCTTCCTTTCCACATTTCCAACAGCC | GS4R | HIV | GAG | R | 2051 | 2023 | 29 | 1 | 62 TCTTTCATTTGGTGTCCTTC | t1eR | HIV | GAG | R | 2063 | 2044 | 20 | 1 | 63 TCAGTACAATCTTTCATTTG | GAS7R | HIV | GAG | R | 2072 | 2053 | 20 | 1 | 64 ACAGGCTAATTTTTTAGGGA | SQ4F | HIV(CLADEC) | | F | 2076 | 2095 | 20 | | GGGAAGATCTGGCCTTCCTACAAGGG | 5'RVP | HIV | PR | F | 2092 | 2117 | 26 | 1 | 65 TTCCCTAAAAAATTAGCCTG | pan1efRx | HIV | GAG | R | 2096 | 2077 | 20 | 1 | 66 TGTRGGAAGGCCAGATCTTCC | 1eRx | HIV | GAG | R | 2113 | 2093 | 21 | 1 | 67 AGACCAGAGCCAACAGCCCC | p2c-F | HIV | GAG | F | 2143 | 2162 | 20 | 1 | 68 GAGAGCTTCAGGTTTGGGGA | 5PR.1 | HIV | PR | F | 2170 | 2189 | 20 | 1 | 69 GAGAGCTTCAGGTTTGGGG | SEQ1FOR | HIV | RT | F | 2170 | 2188 | 19 | 1 | 70 TGAAGCTCTCTTCTGGTGGG | HPR2160R | HIV | PR | R | 2179 | 2160 | 20 | 1 | 71 TCGAATCTGAAGCTCTCTGCTGGTG | 14R(3)C | HIV(CLADEC) | | R | 2186 | 2162 | 25 | | GGAGCCGATAGACAAGG | 5'INPROT | HIV | PR | F | 2217 | 2233 | 17 | 1 | 72 CCAAAGAGTGACCTGAGGGAAG | GA2249R | HIV | GAG | R | 2270 | 2249 | 22 | 1 | 73 TCTTTATTGTGACGAGGGGTCG | GA2274R | HIV | GAG | R | 2295 | 2274 | 22 | 1 | 74 CCTTTAGTTGCCCCCCTATC | G9(gag) | HIV | GAG | R | 2313 | 2294 | 20 | 1 | 75 TATCATCTGCTCCTGTATC | G10(gag) | HIV | GAG | R | 2343 | 2325 | 19 | 1 | 76 CTAATACTGTATCATCTGCTCCTGT | HIP202 | HIV(CLADEC) | | R | 2353 | 2328 | 26 | | CAAATTCATTTCTTCTAAT | seq2bR | HIV | GAG | R | 2366 | 2348 | 19 | 1 | 77 GGAAACCAAAAATGATAGGGGGAATTGGAGG | PR2377F | HIV | PR | F | 2377 | 2407 | 31 | 1 | 78 GGGAATTGGAGGTTTTATCAAAGTAAGACAGTA | PR2396F | HIV | PR | F | 2396 | 2428 | 33 | 1 | 79 ATTCCCCCTATCATTTTTGG | t2bR | HIV | GAG | R | 2401 | 2382 | 20 | 1 | 80 TTACTTTGATAAAACCTCC | HPR2403R | HIV | PR | R | 2421 | 2403 | 19 | 1 | 81 TCTTACTTTGATAAAACCTC | pan2bRx | HIV | GAG | R | 2423 | 2404 | 20 | 2 | 1 GGACCTACACCTGTCAACATAATTGGAAGAA | PR2484F | HIV | PR | F | 2484 | 2514 | 31 | 2 | 2 CCAATTATGTTGACAGGTGTAGGTCCTA | SCafR | HIV | RT | R | 2509 | 2482 | 28 | 2 | 3 CCTGGCTTTAATTTTACTGGTACAG | 3'INPROT | HIV | RT | R | 2593 | 2569 | 25 | 2 | 4 AAACAATGGCCATTAACAGAAGAGA | SQ5F | HIV(CLADEC) | | F | 2613 | 2637 | 25 | | TCTTCTGTCAATGGCCATTGTTTAAC | CP2 | HIV | RT | R | 2635 | 2610 | 26 | 2 | 5 TCTTCTGTCAATGGCCATTG | GR2635 | HIV(CLADEC) | GAG | R | 2635 | 2616 | 20 | | GTGTTATATGGATTTTCAGGCCC | 13R(2)C(2) | HIV(CLADEC) | | R | 2722 | 2700 | 23 | | GAGTATTGTATGGATTTTCAGGCCCAAT | ProC- | HIV | GAG | R | 2724 | 2697 | 28 | 2 | 6 GAGTATTRTATGGATTTTCAGGCCC | PR.R2 | HIV | GAG | R | 2724 | 2700 | 25 | 2 | 7 GGAGTGTTATATGGATTTTCAGGCCCAATT | 3'rvp | HIV(CLADEC) | GAG | R | 2725 | 2696 | 30 | | GGCAAATACTGGAGTATTGTATGG | 3'RVP | HIV | RT | R | 2735 | 2712 | 24 | 2 | 8 GGCAAATACTGGAGTATTGTATG | ProA- | HIV | GAG | R | 2735 | 2713 | 23 | 2 | 9 CTGAAATCTACTAATTTYCTCCA | PR.R1 | HIV | GAG | R | 2782 | 2760 | 23 | 2 | 10 CTTCCCAGAAGTCTTGAGTTC | SEQ6R | HIV | RT | R | 2817 | 2797 | 21 | 2 | 11 TAACCCTGCGGGATGTGGTATTCC | 2cRx(nt2850) | HIV | RT | R | 2849 | 2826 | 24 | 2 | 12 TTTAACCCTGCTGGGTGTGGTATYCCT | 2cRx | HIV(CLADEC) | GAG | R | 2851 | 2825 | 27 | | TACTGCATTTACCATACCTAGTATAAAC | RH14 | HIV | RT | F | 2930 | 2957 | 28 | 2 | 13 GGTGATCCTTTCCATCC | BR | HIV | RT | R | 3019 | 3003 | 17 | 2 | 14 GGATGATTTGTATGTAGG | SEQ6A | HIV | RT | F | 3101 | 3118 | 18 | 2 | 15 AACATCAGAAAGAACCTCCATT | RT3208F | HIV | RT | F | 3208 | 3229 | 22 | 2 | 16 CTTTGGATGGGTTATGAACT | SQ6F | HIV(CLADEC) | | F | 3231 | 3250 | 20 | | CATTTGTCAGGATGGAGTTCATA | RTC | HIV(CLADEC) | | R | 3265 | 3243 | 23 | | ATAGGCTGTACTGTCCATTTATCAGG | COMB3 | HIV | RT | R | 3280 | 3255 | 26 | 2 | 17 TGTATGTCATTGACAGTCC | SQ12R | HIV(CLADEC) | | R | 3322 | 3304 | 19 | | CCACTAACTTCTGTATGTCATTGACAGTCCAGC | NE1 | HIV | RT | R | 3333 | 3301 | 33 | 2 | 18 GCAGAGTTAGAATTAGCAGAGAACAG | SQ6.5FC | HIV(CLADEC) | | F | 3444 | 3469 | 26 | | TATTATGACCCATCAAAAGACT | RT3501F | HIV | RT | F | 3501 | 3522 | 22 | 2 | 19 AGCAGGGGCAAGGCCAATGG | RT3560F | HIV | RT | F | 3541 | 3560 | 20 | 2 | 20 ATTTGATATGTCCATTGGCC | RT3571R | HIV | RT | R | 3571 | 3552 | 20 | 2 | 21 TAAATGGCTCTTGATAAATTTG | RT3588R | HIV | RT | R | 3588 | 3567 | 22 | 2 | 22 CCATTTAAAAATCTGAAAACAG | RT3582F | HIV | RT | R | 3603 | 3582 | 22 | 2 | 23 GCATAGTAATATGGGGAAAGA | INS1F | HIV | RT | F | 3685 | 3705 | 21 | 2 | 24 ACAGAAAGCATAGTAATATGGG | RT3678F | HIV | RT | R | 3699 | 3678 | 22 | 2 | 25 TTTAGGAGTCTTTCCCCATATTACTAT | SQ11RC(3) | HIV(CLADEC) | | R | 3713 | 3687 | 27 | | CAAACTCCCACTCAGGAATCCA | RT3798R | HIV | RT | R | 3798 | 3777 | 22 | 2 | 26 TTAATACCCCTCCCTTAGTG | RT3818F | HIV | RT | F | 3799 | 3818 | 20 | 2 | 27 CTAACTGGTACCATAATTTCACTAAGGGAG | 2.3 | HIV | RT | R | 3837 | 3808 | 30 | 2 | 28 AAGAACCCATAGTAGGAGC | RT3860F | HIV | RT | F | 3841 | 3859 | 19 | 2 | 29 AGGAGCAGAAACTTTCTATGTAGATGG | SQ7F(2) | HIV(CLADEC) | | F | 3854 | 3880 | 27 | | GCTCCTACTATGGGTTCTTTCTCTAACTGG | RT3.1 | HIV | RT | R | 3859 | 3830 | 30 | 2 | 30 CTTTCTATGTAGATGGGGCAGC | 3fFx | HIV | POL | F | 3865 | 3886 | 22 | 2 | 31 GCTTGTAATTCAGTCTTCTGATTTGTTG | SQ11RC(4) | HIV(CLADEC) | | R | 3991 | 3964 | 28 | | CTAAKCCYGAATCCTGCAAAGC | 3eRx | HIV | POL | R | 4023 | 4002 | 22 | 2 | 32 AGTAAACATAGTAACAGACTCACA | RT4025F | HIV | RT | F | 4025 | 4048 | 24 | 2 | 33 GTAACAGACTCACAGTATGCATTAGG | RT4035F | HIV | RT | F | 4035 | 4060 | 26 | 2 | 34 TGCTCTATTATTTGATTGAC | RT4101R | HIV | RT | R | 4120 | 4101 | 20 | 2 | 35 TCTACCTGTCATGGGTACCAGCACA | IN4141F | HIV | INT | F | 4141 | 4165 | 25 | 2 | 36 TGGCATGGGTACCAGCACAC | RT4166F | HIV | RT | F | 4147 | 4166 | 20 | 2 | 37 CACAAAGGAATTGGAGGAAATGAACA | IN4164F | HIV | INT | F | 4164 | 4189 | 26 | 2 | 38 TCTACTTGTTCATTTCCTCCAAT | IN4195R | HIV | INT | R | 4195 | 4173 | 23 | 2 | 39 CTGTGATATTTCTCATGTTC | RT4260R | HIV | RT | R | 4279 | 4260 | 20 | 2 | 40 CATTGCTCTCCAATTACTGTGATATTTCTCATG | OUT3 | HIV | RT | R | 4295 | 4263 | 33 | 2 | 41 AGGTTAAAATCACTAGCCATTGCTCTCC | RT22R | HIV | RT | R | 4312 | 4285 | 28 | 2 | 42 GGTGGCAGGTTAAAATCACYAGCC | 3g/fRx | HIV | POL | R | 4318 | 4295 | 24 | 2 | 43 GYATGGCTTCTCCTTTTAGCTGRCA | IN4380R | HIV | INT | R | 4380 | 4356 | 25 | 2 | 44 CTAGYTGCCATATTCCTGGACTACAGTC | IN4419R | HIV | INT | R | 4419 | 4392 | 28 | 2 | 45 GTGTACAATCTAGTTGCCA | HIN4410R | HIV | RT | R | 4428 | 4410 | 19 | 2 | 46 ATGTGTACAATCTAGTTGCCATAT | IN4430R | HIV | INT | R | 4430 | 4407 | 24 | 2 | 47 AAGTTATCCTGGTAGCAGTT | HIN4460F | HIV | RT | F | 4441 | 4460 | 20 | 2 | 48 CCTGGTAGCAGTCCATGTAGC | SQ8FC | HIV(CLADEC) | | F | 4448 | 4468 | 21 | | GTAGCAGTCCATGTAGCCAGTGG | IN4452F | HIV | INT | F | 4452 | 4474 | 23 | 2 | 49 CTTCTGCTTCTATATATCCACTGGCTACATG | IN4491R | HIV | INT | R | 4491 | 4461 | 31 | 2 | 50 CAGCAGARACAGGGCARGAAACAGC | 4cFx | HIV | POL | F | 4498 | 4522 | 25 | 2 | 51 TAAAATTAGCAGGAAGATGGCCAGT | IN4534F | HIV | INT | F | 4534 | 4558 | 25 | 2 | 52 GCCATTGTCTGTATGTATTACTTTGACTG | SQ10RC | HIV(CLADEC) | | R | 4583 | 4555 | 29 | | ACTCCTTGACTTTGGGGATTGTAGG | IN4678R | HIV | INT | R | 4678 | 4654 | 25 | 2 | 53 TTCTACTACTCCCTGACTTTGGGGAT | SQ8RC | HIV(CLADEC) | | R | 4685 | 4660 | 26 | | TCTCTTACCTGTCCTATAAT | HIN4710R | HIV | RT | R | 4729 | 4710 | 20 | 2 | 54 CAGCCTGATCTCTTACCTGTCC | 4bRx | HIV | POL | R | 4737 | 4716 | 22 | 2 | 55 ATCTTAAGACAGCAGTACAA | HIN4760F | HIV | RT | F | 4741 | 4760 | 20 | 2 | 56 CTTAAGACAGCAGTACAAATGGCAGT | IN4743F | HIV | INT | F | 4743 | 4768 | 26 | 2 | 57 ATCCCCCCTTTTCTTTTAAAATTGTG | IN4801R | HIV | INT | R | 4801 | 4776 | 26 | 2 | 58 TTCAAAATTTTCGGGTTTATTACAG | VIF4888F | HIV | VIF | F | 4888 | 4912 | 25 | 2 | 59 CTCTGGAAAGGTGAAGGGGCAGT | VIF4952F | HIV | VIF | F | 4953 | 4975 | 23 | 2 | 60 TGTATTACTACTGCCCCTTC | LA89 | HIV | INT | R | 4984 | 4965 | 20 | 2 | 61 AGATAATAGTGACATAAAAGTAGTGCCAAGAAG | VVVc | HIV | VIF | F | 4985 | 5017 | 33 | 2 | 62 CATCACCTGCCATCTGTTTTCC | 4cRx | HIV | POL | R | 5064 | 5043 | 22 | 2 | 63 CAGGTAGACAGGATGAAGATCAGAAC | SQ9FC(3) | HIV(CLADEC) | | F | 5074 | 5099 | 26 | | TTGGATGTCTGCTTTCATAATGAT | SQ9RC(3) | HIV(CLADEC) | | F | 5165 | 5188 | 24 | | GGATGAGTGCTTTCATAGTGA | P16 | HIV | | R | 5186 | 5166 | 21 | 2 | 64 TGGGATGTGTACTTCTGAACTTA | IN5214R | HIV | INT | R | 5214 | 5192 | 23 | 2 | 65 CCCCTAGTGGGATGTGTACTTCTG | P17 | HIV | | R | 5221 | 5198 | 24 | 2 | 66 AACATATTGGGGTCTGCATA | HIN5260F | HIV | INT | F | 5241 | 5260 | 20 | 2 | 67 CTGCATACAGGAGAAAGAGACTGG | 4eFx | HIV | VIF | F | 5254 | 5277 | 24 | 2 | 68 TCTCCTGTATGCARACCCCAATATGT | IN5267R | HIV | INT | R | 5267 | 5242 | 26 | 2 | 69 CCCAAATGCCAGTCTCTTTCTCCTG | IN5285R | HIV | INT | R | 5285 | 5261 | 25 | 2 | 70 ATATGAATTAGTTGGTCTGCCAGGCC | SQ9'RC | HIV(CLADEC) | | R | 5366 | 5341 | 26 | | GCAGCATTAATAACACCAAA | HIN5510F | HIV | INT | F | 5491 | 5510 | 20 | 2 | 71 TTGGTCTTCTGGGGCTTGTTCC | 4eRx | HIV | | R | 5582 | 5561 | 22 | 2 | 72 GATACTTGGGCAGGAGTGGAAGC | 5cFx-2 | HIV | | F | 5712 | 5734 | 23 | 2 | 73 GGAGCCAGTAGATCCTAACCTAGAG | SQ10FC | HIV(CLADEC) | | F | 5833 | 5857 | 25 | | CCTGGAAICATCCAGGAAGTCAGCCTA | SC04F | HIV | TAT | F | 5859 | 5885 | 27 | 2 | 74 TAGGCTGACTTCCTGGATGCTTC | SC04R | HIV | TAT | R | 5885 | 5863 | 23 | 2 | 75 AGTRTTAGGCTGACTTCCTGGATGC | 5bRx-1 | HIV | | R | 5890 | 5866 | 25 | 2 | 76 AGICTTAGGCATCTCCTATGGCAGGAA | SC02F | HIV | TAT | F | 5952 | 5979 | 28 | 2 | 77 GAAGAAGCGGAGACAGCGACGAAGAICTC | SC05F | HIV | TAT | F | 5977 | 6005 | 29 | 2 | 78 CTTCCTGCCATAGGAGATGCCTA | SC02R | HIV | TAT | R | 5980 | 5958 | 23 | 2 | 79 CTCCGCTTCTTCCTGCCATAGGAGAT | SQ8R | HIV(CLADEC) | | R | 5988 | 5963 | 26 | | AGCTCTTCGTCGCTGTCTCCGCTT | SC05R | HIV | TAT | R | 6004 | 5981 | 24 | 2 | 80 AAAGAGCAGAAGACAGTGGCAATG | EIF | HIV | | F | 6204 | 6227 | 24 | 2 | 81 CACTCTCATTGCCACTGTCTTCTGC | 5cRx | HIV | | R | 6233 | 6209 | 25 | 3 | 1 CAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCT | MK603 | HIV | ENV | F | 6316 | 6353 | 38 | 3 | 2 CCATAATAGACTGTGACCCACAA | VVd | HIV | ENV | R | 6346 | 6324 | 23 | 3 | 3 AGGTACCCCATAATAGACTGTGA | VPU-R | HIV | ENV | R | 6353 | 6331 | 23 | 3 | 4 ACTCTATTTTGTGCATCAGA | SQ11F | HIV(CLADEC) | | F | 6375 | 6394 | 20 | | TCTATTCTGTGCATCAGGTGCTAAAGCATA | SQ11FC | HIV(CLADEC) | | F | 6377 | 6406 | 30 | | ACACATGCCTGTGTACCCACAGA | SQV2F1 | HIV | ENV | F | 6435 | 6457 | 23 | 3 | 5 ACACATGCCTGTGTACCCACAGA | SQV2F1 | HIV | ENV | F | 6435 | 6457 | 23 | 3 | 6 CCTGTGTACCCACARACC | F6c-F | HIV | | F | 6442 | 6459 | 18 | 3 | 7 GGTCTGTGGGTACACAGGCATGT | ENV6437R | HIV | ENV | R | 6459 | 6437 | 23 | 3 | 8 TCTACCATGTTATTTTTCCACAT | ENV6507R | HIV | ENV | R | 6529 | 6507 | 23 | 3 | 9 GCATGAGGATATAATCAGTTTATGGGAT | V2IF | HIV | ENV | F | 6536 | 6563 | 28 | 3 | 10 GATATAATCAGTTTATGGGATC | SQV2F2 | HIV | ENV | F | 6543 | 6564 | 22 | 3 | 11 GTTTATGGGATCAAAGCCTAAA | V2I2F | HIV | ENV | F | 6553 | 6574 | 22 | 3 | 12 CAATTTAAAGAAACACAGAGTGG | p6b-R | HIV | ENV | R | 6616 | 6594 | 23 | 3 | 13 ARATAAAAAACTGCTCTTTCAA | p6d-F | HIV | ENV | F | 6682 | 6703 | 22 | 3 | 14 CCTCAGCCATTACACAGGCCTGTCCAAAG | SQ12F | HIV(CLADEC) | | F | 6817 | 6845 | 29 | | GCCTGTCCAAAGGTATCCTTTGAGCCA | V2IRF | HIV | ENV | F | 6834 | 6860 | 27 | 3 | 15 TGGCTCAAAGGATACCTTTGGACAGGC | V2IR | HIV | ENV | R | 6860 | 6834 | 27 | 3 | 16 CTGTGGGTACACAGGCATGTGTAGC | SQ7R(2)C | HIV(CLADEC) | | R | 6864 | 6839 | 26 | | GAATTGGGTCAAAAGAGACCTTTGGA | SQ6RC(2) | HIV(CLADEC) | | R | 6864 | 6839 | 26 | | ATAATGTATAGGAATCGGGT | SQ6RC | HIV(CLADEC) | | R | 6875 | 6856 | 20 | | AATGTCAGYACAGTACAATGTACAC | V302F | HIV | ENV | F | 6945 | 6969 | 25 | 3 | 17 AATGTCAGYACAGTACAATGTACAC | V3O2F | HIV | ENV | F | 6945 | 6969 | 25 | 3 | 18 GTGTACATTGTACTGTGCTGACAT | SQV2R1 | HIV | ENV | R | 6969 | 6946 | 24 | 3 | 19 ATTCCATGTGTACATTGTACTGT | VVVb | HIV | ENV | R | 6976 | 6954 | 23 | 3 | 20 TCAACTCAACTACTGTTAAATGGTAGCCTAGC | DR7C | HIV(CLADEC) | | F | 6990 | 7021 | 32 | | TAAATGGCAGTYTAGCAGAAGAAG | V3I2F | HIV | ENV | F | 7006 | 7029 | 24 | 3 | 21 TAAATGGCAGTYTAGCAGAAGAAG | V3I2F | HIV | V3 | F | 7006 | 7029 | 24 | 3 | 22 TTCTTCTGCTAGACTGCCATTTAA | V3IFR(new) | HIV | V3 | R | 7028 | 7005 | 24 | 3 | 23 TACAATATGCTTGTCTTAT | 6d-R | HIV | ENV | R | 7219 | 7200 | 20 | 3 | 24 ACAATYTCTGGGTCCCCTCCTGAGGA | V3I2R | HIV | V3 | R | 7339 | 7314 | 26 | 3 | 25 GTTTTAWTTGTGGAGGGG | F6f-F | HIV | ENV | F | 7348 | 7365 | 18 | 3 | 26 GTGGAGGGGAATTTTTCTACTGTA | SQV4FI | HIV | V3 | F | 7357 | 7380 | 24 | 3 | 27 ATTACAGTAGAAAAATTCCCCTCCAC | V3O2R | HIV | V3 | R | 7382 | 7357 | 26 | 3 | 28 CATTGCTCGTCCTACCCCCTGCCAC | 5R(3)C | HIV(CLADEC) | | R | 7526 | 7502 | 25 | | GGGAGGGGCATACATTGC | F6e-R | HIV | ENV | R | 7538 | 7521 | 18 | 3 | 29 GGACAATTGGAGAAGTGAATTAT | GP41FI | HIV | ENV | F | 7652 | 7674 | 23 | 3 | 30 TCCAATTGTCCCTCATATCTCCTCCTCCA | CO601 | HIV | ENV | R | 7662 | 7634 | 29 | 3 | 31 GAATTATATAAATATAAAGTAGTA | GP41FI2 | HIV | ENV | F | 7668 | 7691 | 24 | 3 | 32 TATATAAATATAAAGTGGTAGAAATTAAGC | SQ13F(2)C | HIV(CLADEC) | | F | 7672 | 7701 | 30 | | TATAATTCACTTCTCCAATTGTCC | CD4R | HIV | ENV | R | 7675 | 7652 | 24 | 3 | 33 TATAATTCACTTCTCCAATTGTCC | CD4R | HIV | ENV | R | 7675 | 7652 | 24 | 3 | 34 CCATTAGGAGTAGCACCCACC | GP41.1A | HIV | ENV | F | 7701 | 7721 | 21 | 3 | 35 CCCATAGTGCTTCCTGC | p6f-R | HIV | ENV | R | 7816 | 7800 | 17 | 3 | 36 GCCCATAGTGCTTCCTGCTGCTCCCAAGAACC | CO602 | HIV | ENV | R | 7817 | 7786 | 32 | 3 | 37 TTGCAACTCACAGTCTGGGG | p7d-F | HIV | ENV | F | 7920 | 7939 | 20 | 3 | 38 ACTCACGGTCTGGGGCATTA | SQ14FC | HIV(CLADEC) | | F | 7925 | 7944 | 20 | | ATCAAGCAGCTCCAGGCAAGA | GP41.2A | HIV | ENV | F | 7941 | 7961 | 21 | 3 | 39 TGCCTGGAGCTGCTTGATGCCCCAGAC | ENVR | HIV | ENV | R | 7958 | 7931 | 28 | 3 | 40 GTTGATCCCTTAGGTATCTTTCTA | 4R(2)C | HIV(CLADEC) | | R | 7995 | 7972 | 24 | | CTAGGAGCTGTTGATCCTTTAGGTAT | SQ5.5RC | HIV(CLADEC) | | R | 8004 | 7979 | 26 | | TTGTTCATTCTTTTCTTGCTG | GP41.1B | HIV | ENV | R | 8198 | 8178 | 21 | 3 | 41 TTTGTGGAATTGGTTTRACATAA | SQGP41F | HIV | ENV | F | 8228 | 8250 | 23 | 3 | 42 GCCTCCTACTATCATTATGAATA | SQGP41R | HIV | ENV | R | 8297 | 8275 | 23 | 3 | 43 AARCCTAYYAAGCCTCC | F7c-R | HIV | ENV | R | 8308 | 8292 | 17 | 3 | 44 AATAGAGTTAGGCAGGGATACTCACC | ENV8340F | HIV | ENV | F | 8340 | 8365 | 26 | 3 | 45 AGTTAGGMAGGGATAYTCACC | 7eFx3 | HIV | ENV | F | 8345 | 8365 | 21 | 3 | 46 TGGAGAGAGAGACAGAGACAGATCC | ENV8435F | HIV | ENV | F | 8435 | 8459 | 25 | 3 | 47 GGATCTGTCTCTGTCTCTCTCTCCA | SC90R | HIV | ENV | R | 8459 | 8435 | 25 | 3 | 48 CAGCTACCACCGCTTGAGAGACTTA | ENV8522F | HIV | ENV | F | 8522 | 8546 | 25 | 3 | 49 TAAGTCTCTCAAGCGGTGGTAGCTGAA | SC52R | HIV | ENV | R | 8546 | 8520 | 27 | 3 | 50 GAGAGCGGTGGAACTTCTGG | SQ15FC | HIV(CLADEC) | | F | 8561 | 8580 | 20 | | TTTAGTTCCAGACCCCAATA | SQ3RC | HIV(CLADEC) | | R | 8647 | 8628 | 20 | | GCTATGGTATCAAGCAGACTAATAGCACTC | SQ3R(2)C | HIV(CLADEC) | | R | 8680 | 8651 | 30 | | TAGCAGTAGCTGAGGGGACAGATAG | NEF8683F | HIV | NEF | F | 8683 | 8707 | 25 | 3 | 51 GTAGCTGAGGGGACAGATAGGGTTAT | NefOF | HIV | NEF | F | 8688 | 8713 | 26 | 3 | 52 GAGGGGACAGATAGGGTTATAGAAGTAGTAC | NEF8694F | HIV | NEF | F | 8694 | 8724 | 31 | 3 | 53 CACATACCTAGAAGAATAAGACAGGGCT | NEF8748F | HIV | NEF | F | 8748 | 8775 | 28 | 3 | 54 ACATACCTASAAGAATAAGACAGG | NefIF | HIV | NEF | F | 8749 | 8772 | 24 | 3 | 55 CTGTCTTATTCTTCTAGGTATGT | GP41RI | HIV | ENV | R | 8771 | 8749 | 23 | 3 | 56 TTGCTATAARATGGGTGGCAAGTGGTC | NEF1F | HIV | NEF | F | 8787 | 8813 | 27 | 3 | 57 CTTTTTGACCACTTGCCACCCAT | GP41RO | HIV | ENV | R | 8819 | 8797 | 23 | 3 | 58 GGATGGCCTACTGTAAGGGAAAGAATG | NEF2F | HIV | NEF | F | 8830 | 8856 | 27 | 3 | 59 GGGGTGGGAGCAGYATCTCG | NEF5F | HIV | NEF | F | 8881 | 8900 | 20 | 3 | 60 CCTTGTAAGTCATTGGTCTTAAAGGTACC | EIR | HIV | | R | 9043 | 9015 | 29 | 3 | 61 GGGAGTRAAYTAGCCCTTCCAG | NEF6R | HIV | NEF | R | 9106 | 9085 | 22 | 3 | 62 AGACAAGATATCCTTGATCTGTGG | NEF9112F | HIV | NEF | F | 9112 | 9135 | 24 | 3 | 63 TGTGTAGTTCTGCTAATCAGGGAAGTAGCCTTGTG | EOR | HIV | | R | 9180 | 9145 | 36 | 3 | 64 TATCTGGCTCAACTGGTACTAGC | NEF9249R | HIV | NEF | R | 9250 | 9228 | 23 | 3 | 65 CAGCGGAAAGTCCCTTGTAGCAA | NEF9448R | HIV | NEF | L | 9448 | 9426 | 23 | 3 | 66 GTCCCCAGCGGAAAGTCCCTTGTA | NEFIR | HIV | NEF/3'LTR | R | 9453 | 9430 | 24 | 3 | 67 CTTATATGCAGGATCTGAGGGCTC | NEF4R | HIV | NEF | R | 9517 | 9494 | 24 | 3 | 68 AAGCAGCTGCTTATATGCAGGATCTGA | NEF3R | HIV | NEF | R | 9526 | 9500 | 27 | 3 | 69 GGTCTAACYAGAGAGACCCAGTACAG | FB13 | HIV | NEF/3'LTR | R | 9557 | 9532 | 26 | 3 | 70 TCCCTAGTTAGCCAGAGAGCT | NEF9593R | HIV | NEF | R | 9593 | 9573 | 21 | 3 | 71 TCAAGGCAAGCTTTATTGAGGCTTAA | 3LTRi | HIV | 3LTR | R | 9628 | 9603 | 26 | 3 | 72 GCACTCAAGGCAAGCTTTATTGAGGCTTAA | NefOR/FB12 | HIV | NEF/3'LTR | R | 9632 | 9607 | 26 | 3 | 73 ACCGGGACTCAGATTCTCCCCAGAC | HLA-Apre1F | HUMAN | HLA | | | | | | CACACATYAGGYCCTCCAAGCTCTCAC | HLA-Ain7R | HUMAN | HLA | | | | | | GAAACSGCCTCTGYGGGGAGAAGCAA | HLA-AF | HUMAN | HLA | | | | | | TGTTGGTCCCAATTGTCTCCCCTC | HLA-AR | HUMAN | HLA | | | | | | AGCCGCGCCKGGASGAGGGTC | HLA-AS1F | HUMAN | HLA | | | | | | GGCCCGTCCGTGGGGGATGAG | HLA-AS2R | HUMAN | HLA | | | | | | GTTTCATTTTGRGTTKAGGCCA | HLA-AS3F | HUMAN | HLA | | | | | | TGTGGGAGGCCAGCCCGGGAGA | HLA-AS4R | HUMAN | HLA | | | | | | CTACGTGGACGACACGCAGTT | HLA-AS5F | HUMAN | HLA | | | | | | ACAGTCTCCGGGTCCGAGAT | HLA-AS6F | HUMAN | HLA | | | | | | TTTGGCCTMAACYSAAAATGAAAC | HLA-AS7R | HUMAN | HLA | | | | | | TTCCCGTTCTCCAGGTRTCTGC | HLA-AS8R | HUMAN | HLA | | | | | | CTCATCCCCCACGGACGGGCC | HLA-AS9F | HUMAN | HLA | | | | | | CGACGTGGGGYCGGACKGGC | HLA-AS10F | HUMAN | HLA | | 37.5 | | | | CGGGAGAYCTAYAGGCGATCAG | HLA-AS11R | HUMAN | HLA | | 37.5 | | | | GGGAGGAGMGAGGGGACCSCAG | HLA-BF | HUMAN | HLA | | 52 | | | | GGAGGCCATCCCCGGCGACCTAT | HLA-BR | HUMAN | HLA | | 127 | | | | GCAGGCGGGGGCGCAGGACC | HLA-BnewF | HUMAN | HLA | | | | | | GGAGATGGGGAAGGCTCCCCACT | HLA-BS4R | HUMAN | HLA | | | | | | GGAGCCGCGCCGGGAGGAGGGTC | HLA-BS1F | HUMAN | HLA | | | | | | GGATGGGGAGTCGTGACCT | HLA-BS2R | HUMAN | HLA | | | | | | GGCGGGTYTCAGCYCCTCCT | HLA-BS10F | HUMAN | HLA | | | | | | CGGGGTCACTCACCGKCCTC | HLA-BS11R | HUMAN | HLA | | | | | | ACKGKGCTGACCGCGGGG | HLA-BS3F | HUMAN | HLA | | | | | | ACTGCCCCTGGTACCMGCGC | HLA-BS13R | HUMAN | HLA | | | | | | GGSCKGGGCCAGGGTCTCAC | HLA-BS12F | HUMAN | HLA | | | | | | ARCGAGGKGCCCKCCCGGCGA | HLA-CF | HUMAN | HLA | | | | | | GGAGATRGGGAAGGCTCCCCACT | HLA-CR | HUMAN | HLA | | | | | | GGAGCCGCGCAGGGAGGWGGGTC | HLA-CS1F | HUMAN | HLA | | | | | | GGCTCCCCACTGCCCYTGGTAC | HLA-CS7R | HUMAN | HLA | | | | | | CGGGTCTCAGCCMCTCCTC | HLA-CS8F | HUMAN | HLA | | | | | | TGGATCTCAGACSGGGAGACT | HLA-CS9R | HUMAN | HLA | | | | | | GGAGGGGTCGKGACCTGCGC | HLA-CS2R | HUMAN | HLA | | | | | | GGGCTGACCRCGGGGGCG | HLA-CS10F | HUMAN | HLA | | | | | | CGGGGCCAGGKTCTCACAYC | HLA-CS11F | HUMAN | HLA | | | | | | TGGTACCYGCGCGCTGCAGC | HLA-CS4R | HUMAN | HLA | | | | | | GGGAGGAGMRAGGGGACCSCAG | HLA-BF_mod | HUMAN | HLA | | | | | | GGAGGCCATCCCSGGCGAYCTAT | HLA_BR_mod | HUMAN | HLA | | | | | | TCTCASCCACTSCTCGYCCCCA | HLA_AEXON2F | HUMAN | HLA | F | | | | | CSGGGSYGGGGTCACTCAC | HLA_AEXON2R | HUMAN | HLA | R | | | | | TCSGGGCCAGGTTCTCACACC | HLA_AEXON3F | HUMAN | HLA | F | | | | | CYGGTACCCGTGCGCTGCAG | HLA_AEXON3R | HUMAN | HLA | R | | | | | CCCAGGCTCCCACTCCATGAGG | HLA_BEXON2F | HUMAN | HLA | F | | | | | CCRGGCCGGGGTCACTCAC | HLA_BEXON2R | HUMAN | HLA | R | | | | | SCKRGGCCAGGGTCTCACA | HLA_BEXON3F | HUMAN | HLA | F | | | | | GCTCCCCACTGCCCCTGGTA | HLA_BEXON3R | HUMAN | HLA | R | | | | | CCCAGGCTCCCACTCCATGARG | HLA_CEXON2F | HUMAN | HLA | F | | | | | CCGGGCYGGGGTCACTCAC | HLA_CEXON2R | HUMAN | HLA | R | | | | | SCGGGGCCAGGKTCTCACA | HLA_CEXON3F | HUMAN | HLA | F | | | | | CTTTACCAGATCTCAAAAAGAAGGTC | CCR5OUTF | HUMAN | CCR5 | | | | | | AGGTCTTCATTACACCTGCAGC | CCR5F | HUMAN | CCR5 | | | | | | CTTCTCATTTCGACACYGAAGC | POLYCCR5R | HUMAN | CCR5 | | | | | | ATGATGGTGAAGATAAGCCTCACAG | CCR5OUTR | HUMAN | CCR5 | | | | | | GTAAAACGACGGCCAG | M13F | PLASMID | | F | | | | | CAGGAAACAGCTATGAC | M13R | PLASMID | | R | | | | | AGAGGAATTCTCCACATACCTASAAGAATAAGACAGG | Nef1F_ECORI | HIV | NEF (construct) | F | | | | 3 | 74 GCCTCCGCGGAAAGTCCCCAGCGGAAAGTCCCTTGTA | NefIR_SACII | HIV | NEF (construct) | R | | | | 3 | 75